miRBase entry: tca-mir-6016b

Stem-loop tca-mir-6016b


Accession
MI0037450
Description
Tribolium castaneum tca-mir-6016b precursor miRNA


Sequence

AGGAGGACUUGUGGGCGUGGCAuugccgaauAACCACGACCACAUGUUCUUCUacucu
((((((((.(((((.(((((.(((....)))..))))).))))).)))))))).....

Structure
-----        U     G     -C   g 
     AGGAGGAC UGUGG CGUGG  Auu c
     |||||||| ||||| |||||  |||  
     UCUUCUUG ACACC GCACC  uaa c
ucuca        U     A     AA   g 


Annotation confidence Not enough data
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Genome context
ChLG7: 14528171-14528228 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-6016b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-6016b-5p

Accession MIMAT0045610
Description Tribolium castaneum tca-miR-6016b-5p mature miRNA
Sequence 1 - AGGAGGACUUGUGGGCGUGGCA - 22
Evidence experimental
Illumina [1]

Mature tca-miR-6016b-3p

Accession MIMAT0045611
Description Tribolium castaneum tca-miR-6016b-3p mature miRNA
Sequence 32 - AACCACGACCACAUGUUCUUCU - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96