miRBase entry: tca-mir-3836i-1

Stem-loop tca-mir-3836i-1


Accession
MI0037441
Description
Tribolium castaneum tca-mir-3836i-1 precursor miRNA


Sequence

CGGUCUAUCUUUGUUUAGACUGauauuuauuuaauuaUCACUGGGCAAAGUGGAUCUUGc
.((((((.((((((((((..(((((..........)))))))))))))))))))))....

Structure
---C      U          AC     uuua 
    GGUCUA CUUUGUUUAG  UGaua    u
    |||||| ||||||||||  |||||     
    CUAGGU GAAACGGGUC  ACUau    u
cGUU      -          --     uaau 


Annotation confidence Not enough data
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Genome context
ChLG2: 2683595-2683654 [+]
Clustered miRNAs
21 other miRNAs are < 10 kb from tca-mir-3836i-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3836i-5p

Accession MIMAT0045601
Description Tribolium castaneum tca-miR-3836i-5p mature miRNA
Sequence 1 - CGGUCUAUCUUUGUUUAGACUG - 22
Evidence experimental
Illumina [1]

Mature tca-miR-3836i-3p

Accession MIMAT0045602
Description Tribolium castaneum tca-miR-3836i-3p mature miRNA
Sequence 38 - UCACUGGGCAAAGUGGAUCUUG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96