miRBase entry: tca-mir-11617f-1

Stem-loop tca-mir-11617f-1


Accession
MI0037440
Description
Tribolium castaneum tca-mir-11617f-1 precursor miRNA


Sequence

CUUGGCAUGGGUGGUACUAUAuggauuauaguaauuauaguacuuucuauggcaacuua
.(((.((((((.(((((((((..............))))))))).)))))).)))....

Structure
---C   G      U         uggauu 
    UUG CAUGGG GGUACUAUA      a
    ||| |||||| |||||||||       
    aac guaucu ucaugauau      u
auuc   g      u         uaauga 


Annotation confidence Not enough data
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Genome context
ChLG2: 2688112-2688170 [+]
Clustered miRNAs
21 other miRNAs are < 10 kb from tca-mir-11617f-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11617f-5p

Accession MIMAT0045600
Description Tribolium castaneum tca-miR-11617f-5p mature miRNA
Sequence 1 - CUUGGCAUGGGUGGUACUAUA - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96