miRBase entry: tca-mir-3836c-5

Stem-loop tca-mir-3836c-5

Accession

MI0037430

Description

Tribolium castaneum tca-mir-3836c-5 precursor miRNA

Sequence

AGGUCCACCUUUUGCUUUUGUUGAUauuuauuuaacuaUCACUGGGCAAGGUAGACCCUGg
.((((.((((..(((((..((.((((..........)))))).))))))))).))))....

Structure

---A    C    UU     UU  U    uuua 
    GGUC ACCU  UGCUU  GU GAUa    u
    |||| ||||  |||||  || ||||     
    CCAG UGGA  ACGGG  CA CUau    u
gGUC    A    --     -U  -    caau

Annotation confidence Not enough data

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Genome context

Unmapped66: 4155-4215 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from tca-mir-3836c-5

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3836c-5p

Accession	MIMAT0045480
Description	Tribolium castaneum tca-miR-3836c-5p mature miRNA
Sequence	1 - AGGUCCACCUUUUGCUUUUGUUGAU - 25
Evidence	experimental Illumina [1]

Mature tca-miR-3836c-3p

Accession	MIMAT0045502
Description	Tribolium castaneum tca-miR-3836c-3p mature miRNA
Sequence	39 - UCACUGGGCAAGGUAGACCCUG - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96