miRBase entry: tca-mir-3836c-4

Stem-loop tca-mir-3836c-4


Accession
MI0037428
Description
Tribolium castaneum tca-mir-3836c-4 precursor miRNA


Sequence

AGGUCCACCUUUUGCUUUUGUUGAUauuuauuuaacuaUCACUGGGCAAGGUAGACCCUGa
.((((.((((..(((((..((.((((..........)))))).))))))))).))))....

Structure
---A    C    UU     UU  U    uuua 
    GGUC ACCU  UGCUU  GU GAUa    u
    |||| ||||  |||||  || ||||     
    CCAG UGGA  ACGGG  CA CUau    u
aGUC    A    --     -U  -    caau 


Annotation confidence Not enough data
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Genome context
ChLG2: 1334221-1334281 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from tca-mir-3836c-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3836c-5p

Accession MIMAT0045480
Description Tribolium castaneum tca-miR-3836c-5p mature miRNA
Sequence 1 - AGGUCCACCUUUUGCUUUUGUUGAU - 25
Evidence experimental
Illumina [1]

Mature tca-miR-3836c-3p

Accession MIMAT0045502
Description Tribolium castaneum tca-miR-3836c-3p mature miRNA
Sequence 39 - UCACUGGGCAAGGUAGACCCUG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96