miRBase entry: tca-mir-3851m-4

Stem-loop tca-mir-3851m-4


Accession
MI0037426
Description
Tribolium castaneum tca-mir-3851m-4 precursor miRNA


Sequence

uuaguacugGGUUGGCACAGAGUAGUACUAUGuaaaauucuauuucaUAGUACGACCCGUGUCGGCCCAguaagag
....((((((((((((((.(.((.((((((((.(((......))))))))))).))).))))))))))))))....

Structure
uuag              A A  A        u   au 
    uacugGGUUGGCAC G GU GUACUAUG aaa  u
    |||||||||||||| | || |||||||| |||   
    augACCCGGCUGUG C CA CAUGAUac uuu  c
gaga              C -  G        -   au 


Annotation confidence Not enough data
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Genome context
Unmapped66: 13133-13208 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from tca-mir-3851m-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3851m-5p

Accession MIMAT0045466
Description Tribolium castaneum tca-miR-3851m-5p mature miRNA
Sequence 10 - GGUUGGCACAGAGUAGUACUAUG - 32
Evidence experimental
Illumina [1]

Mature tca-miR-3851m-4-3p

Accession MIMAT0045585
Description Tribolium castaneum tca-miR-3851m-4-3p mature miRNA
Sequence 48 - UAGUACGACCCGUGUCGGCCCA - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96