miRBase entry: tca-mir-3858b

Stem-loop tca-mir-3858b

Accession

MI0037422

Description

Tribolium castaneum tca-mir-3858b precursor miRNA

Sequence

acacaguuuguuguuuuuAGAGAAGCGAAGAUUUUUCGUUguguaaaaaagaaUGAAACUCUUUAGCUUCUCUAAuaaaugcaaauuuauu
....(((((((.....(((((((((((((((..(((((((.(.......).))))))).))))).)))))))))).....)))))))....

Structure

acac       uguuu          -     UU       g gu 
    aguuugu     uuAGAGAAGC GAAGA  UUUCGUU u  a
    |||||||     |||||||||| |||||  ||||||| |  a
    uuaaacg     AAUCUCUUCG UUUCU  AAAGUaa a  a
uuau       uaaau          A     -C       g aa

Annotation confidence Not enough data

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Genome context

ChLG6: 272928-273018 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from tca-mir-3858b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3858b-5p

Accession	MIMAT0045577
Description	Tribolium castaneum tca-miR-3858b-5p mature miRNA
Sequence	19 - AGAGAAGCGAAGAUUUUUCGUU - 40
Evidence	experimental Illumina [1]

Mature tca-miR-3858b-3p

Accession	MIMAT0045578
Description	Tribolium castaneum tca-miR-3858b-3p mature miRNA
Sequence	54 - UGAAACUCUUUAGCUUCUCUAA - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96