miRBase entry: tca-mir-3851d-2

Stem-loop tca-mir-3851d-2


Accession
MI0037421
Description
Tribolium castaneum tca-mir-3851d-2 precursor miRNA


Sequence

aauuaaauuuaauauugAGUGCACAUGGGGUGGUACUGUGuaauuuuugacucaUAGUACGGCCCAUGUUGGCUCaguaauaaauuacauu
.....((((((.((((((((..(((((((.(.((((((((............)))))))).))))))))..)))))))).)))))).....

Structure
aauua      a        GC       G G        uaauu 
     aauuua uauugAGU  ACAUGGG U GUACUGUG     u
     |||||| ||||||||  ||||||| | ||||||||      
     uuaaau augaCUCG  UGUACCC G CAUGAUac     u
uuaca      a        GU       - G        ucagu 


Annotation confidence Not enough data
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Genome context
ChLG6: 8930246-8930336 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from tca-mir-3851d-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3851d-3p

Accession MIMAT0018779
Description Tribolium castaneum tca-miR-3851d-3p mature miRNA
Sequence 55 - UAGUACGGCCCAUGUUGGCUC - 75
Evidence experimental
Illumina [2]

Mature tca-miR-3851d-2-5p

Accession MIMAT0045576
Description Tribolium castaneum tca-miR-3851d-2-5p mature miRNA
Sequence 18 - AGUGCACAUGGGGUGGUACUGUG - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96