miRBase entry: tca-mir-3851g-2

Stem-loop tca-mir-3851g-2

Accession

MI0037418

Description

Tribolium castaneum tca-mir-3851g-2 precursor miRNA

Sequence

uuuaauacuaAGUGGACAUGGGGUGAUACUGUGuaauuuuugacucaUAGCACGACCCGUGUUGGCUCaguaauaua
.....((((.(((.(((((((((((...(((((............))))))))..)))))))).))).)))).....

Structure

uuuaa    a   G        --   AUA     uaauu 
     uacu AGU GACAUGGG  GUG   CUGUG     u
     |||| ||| ||||||||  |||   |||||      
     auga UCG UUGUGCCC  CAC   GAUac     u
auaua    C   G        AG   ---     ucagu

Annotation confidence Not enough data

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Genome context

ChLG5: 235471-235547 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from tca-mir-3851g-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3851g-5p

Accession	MIMAT0045521
Description	Tribolium castaneum tca-miR-3851g-5p mature miRNA
Sequence	11 - AGUGGACAUGGGGUGAUACUGUG - 33
Evidence	experimental Illumina [1]

Mature tca-miR-3851g-2-3p

Accession	MIMAT0045571
Description	Tribolium castaneum tca-miR-3851g-2-3p mature miRNA
Sequence	48 - UAGCACGACCCGUGUUGGCUC - 68
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96