miRBase entry: tca-mir-11619c

Stem-loop tca-mir-11619c

Accession

MI0037414

Description

Tribolium castaneum tca-mir-11619c precursor miRNA

Sequence

aacuaUCGGAUGAGUGAUGAUAGUCUGCGAUAuucuucauuuuauaauuuaacaaaUGAAGAGUCUCAGACUUGGUCUUACGCUcgauugcucgacacaa
.....((((.(((((((.(((((((((.(((..(((((((((...........)))))))))))).))))))..))).).)))))).....)))).....

Structure

aacua    ----A      - U   --      C   Au         uaua 
     UCGG     UGAGUG A GAU  AGUCUG GAU  ucuucauuu    a
     ||||     |||||| | |||  |||||| |||  |||||||||    u
     agcu     gcUCGC U CUG  UCAGAC CUG  AGAAGUaaa    u
aacac    cguua      A U   GU      U   --         caau

Annotation confidence Not enough data

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Genome context

ChLG2: 1334086-1334185 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from tca-mir-11619c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11619c-5p

Accession	MIMAT0045563
Description	Tribolium castaneum tca-miR-11619c-5p mature miRNA
Sequence	6 - UCGGAUGAGUGAUGAUAGUCUGCGAUA - 32
Evidence	experimental Illumina [1]

Mature tca-miR-11619c-3p

Accession	MIMAT0045564
Description	Tribolium castaneum tca-miR-11619c-3p mature miRNA
Sequence	57 - UGAAGAGUCUCAGACUUGGUCUUACGCU - 84
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96