Stem-loop sequence tca-mir-971b

Accession

MI0037413 (change log)

Description

Tribolium castaneum miR-971b stem-loop

Literature search

1 open access papers mention tca-mir-971b
(2 sentences)

Stem-loop

   agcuu   --gu          g g     c    uuu        ----     c 
5'      uga    guguauaguc g ucacu uaag   gaacacca    agcua a
        |||    |||||||||| | ||||| ||||   ||||||||    |||||  
3'      acu    cacaugucag c aguga auuc   cuuguggu    ucgau u
   ucacu   aaac          g g     c    cau        uugc     u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Tcas4.0): ChLG4: 306463-306570 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0037413

Mature sequence tca-miR-971b-5p

• Accession: MIMAT0045561
• Sequence: 25 - cacucuaaguuugaacaccaagc - 47
• Evidence: experimental; Illumina [1]

Mature sequence tca-miR-971b-3p

• Accession: MIMAT0045562
• Sequence: 62 - uugguguucuaccuuacagugag - 84
• Evidence: experimental; Illumina [1]

References

1. PMID:26518483 "MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum" Ninova M, Ronshaugen M, Griffiths-Jones S Genome Res. 26:85-96(2016).