miRBase entry: tca-mir-11619a-1

Stem-loop tca-mir-11619a-1


Accession
MI0037406
Description
Tribolium castaneum tca-mir-11619a-1 precursor miRNA


Sequence

cuuucgaacggaacaCGAAGUCUGUGAUAUUCUUCAUUuuauaauuuaacaaaUGAAGAGUCAUUGGCUUGGUUuuucguucaacac
.....((((((((.((.(((((.(((((..(((((((((...........)))))))))))))).))))).)).)))))))).....

Structure
cuuuc        c  G     U     AU         uaua 
     gaacggaa aC AAGUC GUGAU  UCUUCAUUu    a
     |||||||| || ||||| |||||  |||||||||    u
     cuugcuuu UG UUCGG UACUG  AGAAGUaaa    u
cacaa        U  G     U     --         caau 


Annotation confidence Not enough data
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Genome context
Unmapped58: 7927-8013 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from tca-mir-11619a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11619a-5p

Accession MIMAT0045515
Description Tribolium castaneum tca-miR-11619a-5p mature miRNA
Sequence 16 - CGAAGUCUGUGAUAUUCUUCAUU - 38
Evidence experimental
Illumina [1]

Mature tca-miR-11619a-3p

Accession MIMAT0045558
Description Tribolium castaneum tca-miR-11619a-3p mature miRNA
Sequence 54 - UGAAGAGUCAUUGGCUUGGUU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96