miRBase entry: tca-mir-11618a-3

Stem-loop tca-mir-11618a-3


Accession
MI0037403
Description
Tribolium castaneum tca-mir-11618a-3 precursor miRNA


Sequence

aaaauguuuucgauaaauAGUUAGCAUUGGUCGUUUCUAUGcuucuucguggucaUUGAUCGGCCAAUGUUCGCUUUauuucgaauccucuag
.....(..(((((.....(((.(((((((((((..((.(((((.......)).))).)).))))))))))).))).....)))))..).....

Structure
aaaau uu     uaaau   U           UU  U   -  uc 
     g  uucga     AGU AGCAUUGGUCG  UC AUG cu  u
     |  |||||     ||| |||||||||||  || ||| ||  u
     c  aagcu     UCG UUGUAACCGGC  AG Uac gg  c
gaucu cu     uuaUU   C           -U  U   u  ug 


Annotation confidence Not enough data
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Genome context
Unmapped58: 11866-11958 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from tca-mir-11618a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11618a-5p

Accession MIMAT0045489
Description Tribolium castaneum tca-miR-11618a-5p mature miRNA
Sequence 19 - AGUUAGCAUUGGUCGUUUCUAUG - 41
Evidence experimental
Illumina [1]

Mature tca-miR-11618a-3-3p

Accession MIMAT0045556
Description Tribolium castaneum tca-miR-11618a-3-3p mature miRNA
Sequence 56 - UUGAUCGGCCAAUGUUCGCUUU - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96