miRBase entry: tca-mir-3851k-3

Stem-loop tca-mir-3851k-3


Accession
MI0037401
Description
Tribolium castaneum tca-mir-3851k-3 precursor miRNA


Sequence

gaauaaauuuagugcugGGUUGGCAAAAGGUGGUACCAUGuaacauuuuaacccaUAGUACGACCCAUGCCGGCUCAguaauaaauuacaau
.....((((((.(((((((((((((...(((.((((.(((.............))).)))).)))..))))))))))))).)))))).....

Structure
gaaua      g             AAA   G    C   uaaca 
     aauuua ugcugGGUUGGCA   GGU GUAC AUG     u
     |||||| |||||||||||||   ||| |||| |||     u
     uuaaau augACUCGGCCGU   CCA CAUG Uac     u
uaaca      a             -AC   G    A   ccaau 


Annotation confidence Not enough data
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Genome context
Unmapped58: 11048-11139 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from tca-mir-3851k-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3851k-5p

Accession MIMAT0045493
Description Tribolium castaneum tca-miR-3851k-5p mature miRNA
Sequence 18 - GGUUGGCAAAAGGUGGUACCAUG - 40
Evidence experimental
Illumina [1]

Mature tca-miR-3851k-3p

Accession MIMAT0045494
Description Tribolium castaneum tca-miR-3851k-3p mature miRNA
Sequence 56 - UAGUACGACCCAUGCCGGCUCA - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96