miRBase entry: tca-mir-11624c

Stem-loop tca-mir-11624c


Accession
MI0037394
Description
Tribolium castaneum tca-mir-11624c precursor miRNA


Sequence

uaauagauugguguaaaAUUGAGACUUUAGUAUUUUCAUGcaauuuaugucaacaUGAUAUGCUAAAGUGUCGGUUcuacaacaaucacaaa
.....(((((.((((.((((((.((((((((((..(((((.............))))).)))))))))).)))))).)))).))))).....

Structure
uaaua     g    a      G          UU     caauu 
     gauug ugua aAUUGA ACUUUAGUAU  UCAUG     u
     ||||| |||| |||||| ||||||||||  |||||     a
     cuaac acau UUGGCU UGAAAUCGUA  AGUac     u
aaaca     a    c      G          -U     aacug 


Annotation confidence Not enough data
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Genome context
ChLG6: 8825488-8825579 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from tca-mir-11624c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11624c-5p

Accession MIMAT0045544
Description Tribolium castaneum tca-miR-11624c-5p mature miRNA
Sequence 18 - AUUGAGACUUUAGUAUUUUCAUG - 40
Evidence experimental
Illumina [1]

Mature tca-miR-11624c-3p

Accession MIMAT0045545
Description Tribolium castaneum tca-miR-11624c-3p mature miRNA
Sequence 56 - UGAUAUGCUAAAGUGUCGGUU - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96