miRBase entry: tca-mir-11626b

Stem-loop tca-mir-11626b

Accession

MI0037393

Description

Tribolium castaneum tca-mir-11626b precursor miRNA

Sequence

aauuuugguuuuguuugugGGCAUGAUUGUUUUAGCUCAUGucucaugauucaugaugauuggaaagcaUGAGUUGAUCAAUCAGGCCAGGaaacagaaccaccuuc
.....(((((((((((.(.(((.((((((..(((((((((((((((((...))))).)........))))))))))).)))))).))).).))))))))))).....

Structure

aauuu           g g   A      UU           -------- -     a 
     ugguuuuguuu u GGC UGAUUG  UUAGCUCAUGu        c ucaug  
     ||||||||||| | ||| ||||||  |||||||||||        | ||||| u
     accaagacaaa G CCG ACUAAC  AGUUGAGUacg        g aguac  
cuucc           G A   G      -U           aaagguua u     u

Annotation confidence Not enough data

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Genome context

ChLG6: 8825341-8825447 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from tca-mir-11626b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11626b-5p

Accession	MIMAT0045542
Description	Tribolium castaneum tca-miR-11626b-5p mature miRNA
Sequence	20 - GGCAUGAUUGUUUUAGCUCAUG - 41
Evidence	experimental Illumina [1]

Mature tca-miR-11626b-3p

Accession	MIMAT0045543
Description	Tribolium castaneum tca-miR-11626b-3p mature miRNA
Sequence	70 - UGAGUUGAUCAAUCAGGCCAGG - 91
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96