miRBase entry: tca-mir-11626a

Stem-loop tca-mir-11626a


Accession
MI0037392
Description
Tribolium castaneum tca-mir-11626a precursor miRNA


Sequence

gaaaccugccagggguaagucaugauuuucgucaagauuuugguuuuguuuguUGGCAUGAUUGAUUUAGCUCAUGuugaauugguucaUGAGUUGAUCAAGUAGGCCGAGaaacggagccaccuccgaauuuuguguuuuauuuuucuuaucuuugaagugga
.....((((((((((((((....(((...((.(((((((((((((((((((.(((((....((((((.((((((((...........))))))))))))))....))))).))))))))))).....))))))))))....)))...))))))))))..)))).

Structure
gaaac    --          ucau   -uuu  u        -----           g     AUGA      U        uuga 
     cugc  cagggguaag    gau    cg caagauuu     ugguuuuguuu uUGGC    UUGAUU AGCUCAUG    a
     ||||  ||||||||||    |||    || ||||||||     ||||||||||| |||||    |||||| ||||||||    u
     ggug  guuucuauuc    uua    gu guuuuaag     accgaggcaaa AGCCG    AACUAG UUGAGUac    u
----a    aa          -uuu   uuuu  -        ccucc           G     GAUG      -        uugg 


Annotation confidence Not enough data
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Genome context
ChLG6: 273458-273621 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from tca-mir-11626a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11626a-5p

Accession MIMAT0045540
Description Tribolium castaneum tca-miR-11626a-5p mature miRNA
Sequence 54 - UGGCAUGAUUGAUUUAGCUCAUG - 76
Evidence experimental
Illumina [1]

Mature tca-miR-11626a-3p

Accession MIMAT0045541
Description Tribolium castaneum tca-miR-11626a-3p mature miRNA
Sequence 90 - UGAGUUGAUCAAGUAGGCCGAG - 111
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96