miRBase entry: tca-mir-11625a

Stem-loop tca-mir-11625a

Accession

MI0037391

Description

Tribolium castaneum tca-mir-11625a precursor miRNA

Sequence

auuaaccaacuugauucaaaauugauuuuAAGUAGACAUGAGUGGUGUUUCUguggcauuauucaUAAUACUGCUAAUGUCUCCUGAGacucgcuuuugaauacuccuggaauac
.....(((.....((((((((.(((.(((.((.((((((.((((((((...(((((......))))))))))))).)))))).)).))).))).)))))))).....))).....

Structure

auuaa   acuug        u   u   A  U      G        UUC     ca 
     cca     auucaaaa uga uuu AG AGACAU AGUGGUGU   Ugugg  u
     |||     |||||||| ||| ||| || |||||| ||||||||   |||||   
     ggu     uaaguuuu gcu aGA UC UCUGUA UCGUCAUA   AUacu  u
cauaa   ccuca        c   c   G  C      A        ---     ua

Annotation confidence Not enough data

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Genome context

ChLG6: 273252-273366 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from tca-mir-11625a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11625a-5p

Accession	MIMAT0045538
Description	Tribolium castaneum tca-miR-11625a-5p mature miRNA
Sequence	30 - AAGUAGACAUGAGUGGUGUUUCU - 52
Evidence	experimental Illumina [1]

Mature tca-miR-11625a-3p

Accession	MIMAT0045539
Description	Tribolium castaneum tca-miR-11625a-3p mature miRNA
Sequence	66 - UAAUACUGCUAAUGUCUCCUGAG - 88
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96