miRBase entry: tca-mir-3851h

Stem-loop tca-mir-3851h


Accession
MI0037387
Description
Tribolium castaneum tca-mir-3851h precursor miRNA


Sequence

aauuaaauuuaauauugAGUGGACAUGGGUGGUACUGUGUAAuuuuugacucaUAGUACGGUCCAUGUUGGCUCAguaauaaauuacauu
.....((((((.((((((((.(((((((((.((((((((............)))))))).))))))))).)))))))).)))))).....

Structure
aauua      a        G         G        UAAuu 
     aauuua uauugAGU GACAUGGGU GUACUGUG     u
     |||||| |||||||| ||||||||| ||||||||      
     uuaaau augACUCG UUGUACCUG CAUGAUac     u
uuaca      a        G         G        ucagu 


Annotation confidence Not enough data
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Genome context
ChLG6: 8929175-8929264 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from tca-mir-3851h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3851h-5p

Accession MIMAT0045530
Description Tribolium castaneum tca-miR-3851h-5p mature miRNA
Sequence 18 - AGUGGACAUGGGUGGUACUGUGUAA - 42
Evidence experimental
Illumina [1]

Mature tca-miR-3851h-3p

Accession MIMAT0045531
Description Tribolium castaneum tca-miR-3851h-3p mature miRNA
Sequence 54 - UAGUACGGUCCAUGUUGGCUCA - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96