miRBase entry: tca-mir-11624b-1

Stem-loop tca-mir-11624b-1


Accession
MI0037386
Description
Tribolium castaneum tca-mir-11624b-1 precursor miRNA


Sequence

uaauagauuggaguaaaAUUGAGACUUUAGCAUUUUCAUGcaauuuauaucaacaUGAUGUGCUAAAGUGUCGGUUUuacaacaaucacaaa
.....(((((..((((((((((.((((((((((..(((((.............))))).)))))))))).))))))))))..))))).....

Structure
uaaua     ga          G          UU     caauu 
     gauug  guaaaAUUGA ACUUUAGCAU  UCAUG     u
     |||||  |||||||||| ||||||||||  |||||     a
     cuaac  cauUUUGGCU UGAAAUCGUG  AGUac     u
aaaca     aa          G          -U     aacua 


Annotation confidence Not enough data
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Genome context
ChLG6: 8819743-8819834 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from tca-mir-11624b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11624b-5p

Accession MIMAT0045528
Description Tribolium castaneum tca-miR-11624b-5p mature miRNA
Sequence 18 - AUUGAGACUUUAGCAUUUUCAUG - 40
Evidence experimental
Illumina [1]

Mature tca-miR-11624b-3p

Accession MIMAT0045529
Description Tribolium castaneum tca-miR-11624b-3p mature miRNA
Sequence 56 - UGAUGUGCUAAAGUGUCGGUUU - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96