Stem-loop sequence tca-mir-309c

Accession

MI0037385 (change log)

Description

Tribolium castaneum miR-309c stem-loop

Literature search

2 open access papers mention tca-mir-309c
(15 sentences)

Stem-loop

   auucc    cc   u          ca        u     auu 
5'      ggua  acu uuggauaaac  uacucagu gaugu   a
        ||||  ||| ||||||||||  |||||||| |||||    
3'      ccau  uga aaccuguuug  auggguca cuacg   u
   aacca    uu   u          ag        -     aaa 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Tcas4.0): ChLG5: 7175649-7175737 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from tca-mir-309c

• tca-mir-9d: ChLG5: 7174040-7174132 [+]
• tca-mir-2944b: ChLG5: 7174149-7174250 [+]
• tca-mir-309a: ChLG5: 7174273-7174360 [+]
• tca-mir-3893: ChLG5: 7175554-7175633 [+]
• tca-mir-309c: ChLG5: 7175649-7175737 [+]
• tca-mir-309b: ChLG5: 7175766-7175855 [+]
• tca-mir-3791: ChLG5: 7175867-7175951 [+]

Database links

• miRBase Tracker:MI0037385

Mature sequence tca-miR-309c-5p

• Accession: MIMAT0045526
• Sequence: 18 - ggauaaaccauacucaguugaug - 40
• Evidence: experimental; Illumina [1]

Mature sequence tca-miR-309c-3p

• Accession: MIMAT0045527
• Sequence: 53 - ucacuggguagaguuuguccaa - 74
• Evidence: experimental; Illumina [1]

References

1. PMID:26518483 "MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum" Ninova M, Ronshaugen M, Griffiths-Jones S Genome Res. 26:85-96(2016).