miRBase entry: tca-mir-11624a-3

Stem-loop tca-mir-11624a-3

Accession

MI0037384

Description

Tribolium castaneum tca-mir-11624a-3 precursor miRNA

Sequence

auaauagauugauguaaaAUUGAGACUUUAACAUUUUCAUGcaauuuauaucaacaUGAUAUGCUAGAGUGUCGGUUUuacaacuaucacaaaucaaucuucgaa
.....((((((((((((((((((.((((((.(((..(((((.............))))).))).)))))).)))))))))))...........))))))).....

Structure

auaau       -----------           G      A   UU     caauu 
     agauuga           uguaaaAUUGA ACUUUA CAU  UCAUG     u
     |||||||           ||||||||||| |||||| |||  |||||     a
     ucuaacu           acauUUUGGCU UGAGAU GUA  AGUac     u
aagcu       aaacacuauca           G      C   -U     aacua

Annotation confidence Not enough data

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Genome context

ChLG5: 236198-236302 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from tca-mir-11624a-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11624a-5p

Accession	MIMAT0045523
Description	Tribolium castaneum tca-miR-11624a-5p mature miRNA
Sequence	19 - AUUGAGACUUUAACAUUUUCAUG - 41
Evidence	experimental Illumina [1]

Mature tca-miR-11624a-3-3p

Accession	MIMAT0045525
Description	Tribolium castaneum tca-miR-11624a-3-3p mature miRNA
Sequence	57 - UGAUAUGCUAGAGUGUCGGUUU - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96