miRBase entry: tca-mir-11624a-2

Stem-loop tca-mir-11624a-2


Accession
MI0037383
Description
Tribolium castaneum tca-mir-11624a-2 precursor miRNA


Sequence

uuuuauguaguuuuaaauuauaauagauugguguaaaAUUGAGACUUUAACAUUUUCAUGcaauuuauaucaacaUGAUAUGCUAGAGUGUCGGUUCUacaacuaucacaaaucaaucuucgaacuaaggcucaaacuu
.....((.(((((((.........(((((((((((.((((((.((((((.(((..(((((.............))))).))).)))))).)))))).))))...........)))))))......))))))))).....

Structure
uuuua  u       aauuauaau       -----------    a      G      A   UU     caauu 
     ug aguuuua         agauugg           ugua aAUUGA ACUUUA CAU  UCAUG     u
     || |||||||         |||||||           |||| |||||| |||||| |||  |||||     a
     ac ucggaau         ucuaacu           acaU UUGGCU UGAGAU GUA  AGUac     u
uucaa  -       ---caagcu       aaacacuauca    C      G      C   -U     aacua 


Annotation confidence Not enough data
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Genome context
ChLG5: 235784-235922 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from tca-mir-11624a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11624a-5p

Accession MIMAT0045523
Description Tribolium castaneum tca-miR-11624a-5p mature miRNA
Sequence 38 - AUUGAGACUUUAACAUUUUCAUG - 60
Evidence experimental
Illumina [1]

Mature tca-miR-11624a-3p

Accession MIMAT0045524
Description Tribolium castaneum tca-miR-11624a-3p mature miRNA
Sequence 76 - UGAUAUGCUAGAGUGUCGGUUCU - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96