miRBase entry: tca-mir-11624a-1

Stem-loop tca-mir-11624a-1

Accession

MI0037382

Description

Tribolium castaneum tca-mir-11624a-1 precursor miRNA

Sequence

uaauagauaaguguaaaAUUGAGACUUUAACAUUUUCAUGcaauuuauaucaacaUGAUAUGCUAGAGUGUCGGUUCUacaacuaucacaaa
.....((((..((((.((((((.((((((.(((..(((((.............))))).))).)))))).)))))).))))..)))).....

Structure

uaaua    ag    a      G      A   UU     caauu 
     gaua  ugua aAUUGA ACUUUA CAU  UCAUG     u
     ||||  |||| |||||| |||||| |||  |||||     a
     cuau  acaU UUGGCU UGAGAU GUA  AGUac     u
aaaca    ca    C      G      C   -U     aacua

Annotation confidence Not enough data

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Genome context

ChLG5: 209129-209220 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from tca-mir-11624a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11624a-5p

Accession	MIMAT0045523
Description	Tribolium castaneum tca-miR-11624a-5p mature miRNA
Sequence	18 - AUUGAGACUUUAACAUUUUCAUG - 40
Evidence	experimental Illumina [1]

Mature tca-miR-11624a-3p

Accession	MIMAT0045524
Description	Tribolium castaneum tca-miR-11624a-3p mature miRNA
Sequence	56 - UGAUAUGCUAGAGUGUCGGUUCU - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96