miRBase entry: tca-mir-11619a-3

Stem-loop tca-mir-11619a-3

Accession

MI0037377

Description

Tribolium castaneum tca-mir-11619a-3 precursor miRNA

Sequence

cuuucgaacggaacaCGAAGUCUGUGAUAUUCUUCAUUuuauaauuuaacaaaUGAAGCGUCAUUGGCUUGGUUuuucguucaacac
.....((((((((.((.(((((.(((((...((((((((...........)))))))).))))).))))).)).)))))))).....

Structure

cuuuc        c  G     U     AUU        uaua 
     gaacggaa aC AAGUC GUGAU   CUUCAUUu    a
     |||||||| || ||||| |||||   ||||||||    u
     cuugcuuu UG UUCGG UACUG   GAAGUaaa    u
cacaa        U  G     U     --C        caau

Annotation confidence Not enough data

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Genome context

ChLG2: 1365639-1365725 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from tca-mir-11619a-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11619a-5p

Accession	MIMAT0045515
Description	Tribolium castaneum tca-miR-11619a-5p mature miRNA
Sequence	16 - CGAAGUCUGUGAUAUUCUUCAUU - 38
Evidence	experimental Illumina [1]

Mature tca-miR-11619a-3-3p

Accession	MIMAT0045516
Description	Tribolium castaneum tca-miR-11619a-3-3p mature miRNA
Sequence	54 - UGAAGCGUCAUUGGCUUGGUU - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96