miRBase entry: tca-mir-11619b

Stem-loop tca-mir-11619b


Accession
MI0037375
Description
Tribolium castaneum tca-mir-11619b precursor miRNA


Sequence

uugucgggugugacacaaagucuaugauauucuucauucuauaauucaccaaaUGAAGGGUCACAGACUUUGUCUucgaccacacuucauug
..((..(((..((.(((((((((.((((..((((((((.............)))))))))))).))))))))).))..)))..)).......

Structure
-----uu  cg   gu  c         a    au        cuaua 
       gu  ggu  ga acaaagucu ugau  ucuucauu     a
       ||  |||  || ||||||||| ||||  ||||||||     u
       ca  cca  uU UGUUUCAGA ACUG  GGAAGUaa     u
guuacuu  ca   gc  C         C    --        accac 


Annotation confidence Not enough data
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Genome context
ChLG2: 1363053-1363144 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from tca-mir-11619b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11619b-3p

Accession MIMAT0045512
Description Tribolium castaneum tca-miR-11619b-3p mature miRNA
Sequence 54 - UGAAGGGUCACAGACUUUGUCU - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96