miRBase entry: tca-mir-11618a-4

Stem-loop tca-mir-11618a-4


Accession
MI0037367
Description
Tribolium castaneum tca-mir-11618a-4 precursor miRNA


Sequence

uguuuucgauguauAGUUAGCAUUGGUCGUCUCUAUGcuuuuuuaugaucaUAUACCGAUCGAUGCUCGCUUUauuucgaaucac
....(((((.(((.(((.(((((((((((....((((.((......)).))))...))))))))))).))).))).)))))....

Structure
uguu     u   u   U           UCUC    c  uu 
    uucga gua AGU AGCAUUGGUCG    UAUG uu  u
    ||||| ||| ||| |||||||||||    |||| ||   
    aagcu uaU UCG UCGUAGCUAGC    AUac ag  u
cacu     u   U   C           -CAU    u  ua 


Annotation confidence Not enough data
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Genome context
ChLG2: 2684982-2685066 [+]
Clustered miRNAs
21 other miRNAs are < 10 kb from tca-mir-11618a-4
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11618a-3p

Accession MIMAT0045490
Description Tribolium castaneum tca-miR-11618a-3p mature miRNA
Sequence 52 - UAUACCGAUCGAUGCUCGCUUU - 73
Evidence experimental
Illumina [1]

Mature tca-miR-11618a-4-5p

Accession MIMAT0045503
Description Tribolium castaneum tca-miR-11618a-4-5p mature miRNA
Sequence 15 - AGUUAGCAUUGGUCGUCUCUAUG - 37
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96