miRBase entry: tca-mir-11619e

Stem-loop tca-mir-11619e

Accession

MI0037365

Description

Tribolium castaneum tca-mir-11619e precursor miRNA

Sequence

aaCAAAACUAUCGGAUGAGAGAugagaguuugcgauaaucuucauuuuagaauuuaacaaAUGAGGAGUCACAGACUUGAUUuuucgcucgauuguucgaca
.....(((.(((((.((((((((..(((((((.(((..(((((((((...........)))))))))))).))))))).)))))))).))))).))).....

Structure

aaCAA   U     A        ga       c   aa         uaga 
     AAC AUCGG UGAGAGAu  gaguuug gau  ucuucauuu    a
     ||| ||||| ||||||||  ||||||| |||  |||||||||    u
     uug uagcu gcuuuUUA  UUCAGAC CUG  AGGAGUAaa    u
acagc   u     c        -G       A   --         caau

Annotation confidence Not enough data

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Genome context

ChLG2: 2685848-2685949 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from tca-mir-11619e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11619e-5p

Accession	MIMAT0045499
Description	Tribolium castaneum tca-miR-11619e-5p mature miRNA
Sequence	3 - CAAAACUAUCGGAUGAGAGA - 22
Evidence	experimental Illumina [1]

Mature tca-miR-11619e-3p

Accession	MIMAT0045500
Description	Tribolium castaneum tca-miR-11619e-3p mature miRNA
Sequence	61 - AUGAGGAGUCACAGACUUGAUU - 82
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96