miRBase entry: tca-mir-11617b

Stem-loop tca-mir-11617b

Accession

MI0037352

Description

Tribolium castaneum tca-mir-11617b precursor miRNA

Sequence

uuuccgaauucacuguuaAGUUGUCAUGGAGUAGUACUGUAuggaauauaauaauuaUUGUACUUCCUAUGGCAGCUUAcuaaugaauucaaauu
.....(((((((.((.(((((((((((((.(.(((((.(((..............))).))))).)))))))))))))).)).))))))).....

Structure

uuucc       c  u             A U     U   uggaau 
     gaauuca ug uaAGUUGUCAUGG G AGUAC GUA      a
     ||||||| || ||||||||||||| | ||||| |||       
     cuuaagu au AUUCGACGGUAUC C UCAUG Uau      u
uuaaa       a  c             - U     U   uaauaa

Annotation confidence Not enough data

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Genome context

ChLG2: 1333799-1333893 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from tca-mir-11617b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11617b-5p

Accession	MIMAT0045474
Description	Tribolium castaneum tca-miR-11617b-5p mature miRNA
Sequence	19 - AGUUGUCAUGGAGUAGUACUGUA - 41
Evidence	experimental Illumina [1]

Mature tca-miR-11617b-3p

Accession	MIMAT0045475
Description	Tribolium castaneum tca-miR-11617b-3p mature miRNA
Sequence	58 - UUGUACUUCCUAUGGCAGCUUA - 79
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96