miRBase entry: tca-mir-3806b-4

Stem-loop tca-mir-3806b-4

Accession

MI0037351

Description

Tribolium castaneum tca-mir-3806b-4 precursor miRNA

Sequence

uguagguugaggagcaucucagucaauuuuccuguuUCUACGUACGGAUUCGUAcauauuuuuuaaacaaucagaaUAUGUGUAUUCGUGCGUAGCAAuagggggauuuggugcaaucaacggcgu
.((..(((((...(((((..((((....((((((((.((((((((((((...((((((((((..........)))))))))).)))))))))))).)))))))))))).)))))..))))).))..

Structure

-u  ag     gga     uc    aauu        U            UCG          uuaa 
  gu  guuga   gcauc  aguc    uuccuguu CUACGUACGGAU   UAcauauuuu    a
  ||  |||||   |||||  ||||    |||||||| ||||||||||||   ||||||||||     
  cg  caacu   cgugg  uuag    ggggauAA GAUGCGUGCUUA   GUGUAUaaga    c
ug  -g     -aa     -u    ----        C            --U          cuaa

Annotation confidence Not enough data

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Genome context

ChLGX: 5784181-5784306 [-]

Clustered miRNAs

29 other miRNAs are < 10 kb from tca-mir-3806b-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3806b-5p

Accession	MIMAT0045472
Description	Tribolium castaneum tca-miR-3806b-5p mature miRNA
Sequence	37 - UCUACGUACGGAUUCGUA - 54
Evidence	experimental Illumina [1]

Mature tca-miR-3806b-3p

Accession	MIMAT0045473
Description	Tribolium castaneum tca-miR-3806b-3p mature miRNA
Sequence	77 - UAUGUGUAUUCGUGCGUAGCAA - 98
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96