miRBase entry: tca-mir-3806b-3

Stem-loop tca-mir-3806b-3


Accession
MI0037350
Description
Tribolium castaneum tca-mir-3806b-3 precursor miRNA


Sequence

uuggucagucaacagcuuugcuguguagguugaggagcaucucagucaauuuuccuguuUCUACGUACGGAUUCGUAcauauuuuuugaacaauuaaaaUAUGUGUAUUCGUGCGUAGCAAuagggggguuuggugcaaucaacggcaucguauauuuuauguugguuguaauc
.....(((((((((....(((.((((..(((((...(((((......((((((((((((.((((((((((((...((((((((((..........)))))))))).)))))))))))).)))))))))))).)))))..))))).)))).))).......))))))))).....

Structure
uuggu         ---gcuu   u    ag     gga     ucaguc            U            UCG          uuga 
     cagucaaca       ugc gugu  guuga   gcauc      aauuuuccuguu CUACGUACGGAU   UAcauauuuu    a
     |||||||||       ||| ||||  |||||   |||||      |||||||||||| ||||||||||||   ||||||||||     
     guugguugu       aug uacg  caacu   cgugg      uuggggggauAA GAUGCGUGCUUA   GUGUAUaaaa    c
cuaau         auuuuau   c    -g     -aa     -----u            C            --U          uuaa 


Annotation confidence Not enough data
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Genome context
ChLGX: 5784819-5784992 [-]
Clustered miRNAs
31 other miRNAs are < 10 kb from tca-mir-3806b-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3806b-5p

Accession MIMAT0045472
Description Tribolium castaneum tca-miR-3806b-5p mature miRNA
Sequence 60 - UCUACGUACGGAUUCGUA - 77
Evidence experimental
Illumina [1]

Mature tca-miR-3806b-3p

Accession MIMAT0045473
Description Tribolium castaneum tca-miR-3806b-3p mature miRNA
Sequence 100 - UAUGUGUAUUCGUGCGUAGCAA - 121
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96