miRBase entry: tca-mir-3806b-2

Stem-loop tca-mir-3806b-2

Accession

MI0037349

Description

Tribolium castaneum tca-mir-3806b-2 precursor miRNA

Sequence

cagucaauuuuccuguuUCUACGUACGGAUUCGUAcauauuuuuugaauaaucaaaaUAUGUGUAUUCGUGCGUAGCAAuagggggguuuggug
((.(.((((((((((((.((((((((((....((((((((.((((((....)))))).)))))))))))))))))).)))))))))))).).))

Structure

  g c            U          AUUC        u      a 
ca u aauuuuccuguu CUACGUACGG    GUAcauau uuuuga u
|| | |||||||||||| ||||||||||    |||||||| ||||||  
gu g uuggggggauAA GAUGCGUGCU    UAUGUGUA aaaacu a
  g u            C          ----        U      a

Annotation confidence Not enough data

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Genome context

ChLGX: 5785190-5785283 [-]

Clustered miRNAs

31 other miRNAs are < 10 kb from tca-mir-3806b-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3806b-5p

Accession	MIMAT0045472
Description	Tribolium castaneum tca-miR-3806b-5p mature miRNA
Sequence	18 - UCUACGUACGGAUUCGUA - 35
Evidence	experimental Illumina [1]

Mature tca-miR-3806b-3p

Accession	MIMAT0045473
Description	Tribolium castaneum tca-miR-3806b-3p mature miRNA
Sequence	58 - UAUGUGUAUUCGUGCGUAGCAA - 79
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96