miRBase entry: tca-mir-3806b-1

Stem-loop tca-mir-3806b-1

Accession

MI0037348

Description

Tribolium castaneum tca-mir-3806b-1 precursor miRNA

Sequence

cucaguaaauuuuccuguuUCUACGUACGGAUUCGUAcauauuuuuugaacaaucaaaaUAUGUGUAUUCGUGCGUAGCAAuagggggguuuggugca
..((.((((((((((((((.((((((((((....((((((((.((((((....)))))).)))))))))))))))))).)))))))))))))).))..

Structure

cu  g              U          AUUC        u      a 
  ca uaaauuuuccuguu CUACGUACGG    GUAcauau uuuuga c
  || |||||||||||||| ||||||||||    |||||||| ||||||  
  gu guuuggggggauAA GAUGCGUGCU    UAUGUGUA aaaacu a
ac  g              C          ----        U      a

Annotation confidence Not enough data

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Genome context

ChLGX: 5785511-5785608 [-]

Clustered miRNAs

33 other miRNAs are < 10 kb from tca-mir-3806b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3806b-5p

Accession	MIMAT0045472
Description	Tribolium castaneum tca-miR-3806b-5p mature miRNA
Sequence	20 - UCUACGUACGGAUUCGUA - 37
Evidence	experimental Illumina [1]

Mature tca-miR-3806b-3p

Accession	MIMAT0045473
Description	Tribolium castaneum tca-miR-3806b-3p mature miRNA
Sequence	60 - UAUGUGUAUUCGUGCGUAGCAA - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96