Stem-loop sequence bdo-mir-2b-1

Accession

MI0037317 (change log)

Description

Bactrocera dorsalis miR-2b-1 stem-loop

Literature search

1 open access papers mention bdo-mir-2b-1
(4 sentences)

Stem-loop

   --          -      c  a   uugacauuuucugcuu 
5'   uucuucaaag uggcug ga aug                a
     |||||||||| |||||| || |||                a
3'   gaggaguuuc accgac cu uac                a
   gc          g      a  a   uuaaaguuuuuauaua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM78921v2; GCA_000789215.2): scaffold00002: 2205154-2205237 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdo-mir-2b-1

• bdo-mir-2b-1: scaffold00002: 2205154-2205237 [-]
• bdo-mir-2a-1: scaffold00002: 2204625-2204688 [-]
• bdo-mir-2a-2: scaffold00002: 2204162-2204222 [-]

Database links

• miRBase Tracker:MI0037317

Mature sequence bdo-miR-2b

• Accession: MIMAT0045416
• Sequence: 61 - uaucacagccagcuuugaggagcg - 84
• Evidence: experimental; Torrent [1]

References

1. PMID:26438165 "MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae" Calla B, Geib SM BMC Genomics. 16:740(2015).