Stem-loop sequence bdo-mir-286

Accession

MI0037311 (change log)

Description

Bactrocera dorsalis miR-286 stem-loop

Literature search

1 open access papers mention bdo-mir-286
(2 sentences)

Stem-loop

   -ca    u   -   c         uauuauag 
5'    gcga ugu cgg cuagucgcu        u
      |||| ||| ||| |||||||||        a
3'    ugcu aca gcc gaucaguga        u
   ucg    c   a   a         ucugaaaa 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (ASM78921v2; GCA_000789215.2): scaffold00054: 204944-205010 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdo-mir-286

• bdo-mir-5b-1: scaffold00054: 206689-206749 [-]
• bdo-mir-309b: scaffold00054: 205267-205336 [-]
• bdo-mir-286: scaffold00054: 204944-205010 [-]
• bdo-mir-5b-2: scaffold00054: 204041-204101 [-]
• bdo-mir-6: scaffold00054: 203903-203964 [-]
• bdo-mir-309a: scaffold00054: 203737-203796 [-]
• bdo-mir-4: scaffold00054: 203559-203615 [-]
• bdo-mir-5a: scaffold00054: 203235-203297 [-]

Database links

• miRBase Tracker:MI0037311

Mature sequence bdo-miR-286

• Accession: MIMAT0045433
• Sequence: 45 - ugacuagaccgaacacucgugcu - 67
• Evidence: experimental; Torrent [1]

References

1. PMID:26438165 "MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae" Calla B, Geib SM BMC Genomics. 16:740(2015).