Stem-loop sequence bdo-mir-5b-2

Accession

MI0037305 (change log)

Description

Bactrocera dorsalis miR-5b-2 stem-loop

Literature search

2 open access papers mention bdo-mir-5b-2
(6 sentences)

Stem-loop

   -a      c               ----   a 
5'   aaggaa gaucguugugguaua    ugu u
     |||||| |||||||||||||||    ||| u
3'   uuccuu uuagugacacuauau    acg u
   ug      -               cuga   u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM78921v2; GCA_000789215.2): scaffold00054: 204041-204101 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdo-mir-5b-2

• bdo-mir-5b-1: scaffold00054: 206689-206749 [-]
• bdo-mir-309b: scaffold00054: 205267-205336 [-]
• bdo-mir-286: scaffold00054: 204944-205010 [-]
• bdo-mir-5b-2: scaffold00054: 204041-204101 [-]
• bdo-mir-6: scaffold00054: 203903-203964 [-]
• bdo-mir-309a: scaffold00054: 203737-203796 [-]
• bdo-mir-4: scaffold00054: 203559-203615 [-]
• bdo-mir-5a: scaffold00054: 203235-203297 [-]

Database links

• miRBase Tracker:MI0037305

Mature sequence bdo-miR-5b

• Accession: MIMAT0045420
• Sequence: 41 - uaucacagugauuuuccuugu - 61
• Evidence: experimental; Torrent [1]

References

1. PMID:26438165 "MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae" Calla B, Geib SM BMC Genomics. 16:740(2015).