Stem-loop sequence bdo-mir-2c

Accession

MI0037250 (change log)

Description

Bactrocera dorsalis miR-2c stem-loop

Literature search

1 open access papers mention bdo-mir-2c
(2 sentences)

Stem-loop

   ---        aag      ugua      -  gu 
5'    ucaucaaa   ggcugu    gauauu cu  a
      ||||||||   ||||||    |||||| ||  a
3'    aguaguuu   ccgaca    cuauga ga  c
   acg        cga      ----      a  gu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM78921v2; GCA_000789215.2): scaffold00020: 1019361-1019425 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdo-mir-2c

• bdo-mir-2c: scaffold00020: 1019361-1019425 [+]
• bdo-mir-13b: scaffold00020: 1021893-1021956 [+]

Database links

• miRBase Tracker:MI0037250

Mature sequence bdo-miR-2c

• Accession: MIMAT0045373
• Sequence: 44 - ucacagccagcuuugaugagca - 65
• Evidence: experimental; Torrent [1]

References

1. PMID:26438165 "MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae" Calla B, Geib SM BMC Genomics. 16:740(2015).