Stem-loop sequence gmo-mir-17-2

AccessionMI0036215 (change log)
DescriptionGadus morhua miR-17-2 stem-loop
Literature search

1 open access papers mention gmo-mir-17-2
(4 sentences)

Stem-loop 
   --c         a  g     g   ucuu 
5'    aaagugcuu ca ugcag uag    a
      ||||||||| || ||||| |||    c
3'    uuucacgga gu acguc auc    a
   gac         a  g     -   uaua
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (GadMor_May2010; GCA_000231765.1) Overlapping transcripts
HE569758.1: 354880-354937 [+]
intergenic
Clustered miRNAs
< 10kb from gmo-mir-17-2
gmo-mir-17-2HE569758.1: 354880-354937 [+]
gmo-mir-18a-1HE569758.1: 355007-355068 [+]
gmo-mir-19a-2HE569758.1: 355142-355198 [+]
gmo-mir-20a-2HE569758.1: 355323-355382 [+]
gmo-mir-19b-1HE569758.1: 355452-355513 [+]
gmo-mir-92-1HE569758.1: 355560-355615 [+]
Database links

Mature sequence gmo-miR-17-5p

Accession MIMAT0044301
Sequence

1 -  

caaagugcuuacagugcaggua

 - 22

Get sequence
Evidence experimental; SOLiD [1], Illumina [2]

References

1
PMID:25881242 "Temperature during early development has long-term effects on microRNA expression in Atlantic cod" Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I BMC Genomics. 16:305(2015).
2
PMID:27128807 "Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs" Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM PLoS One. 11:e0153324(2016).