miRBase entry: lja-MIR11180

Stem-loop lja-MIR11180


Accession
MI0035971
Description
Lotus japonicus lja-MIR11180 precursor miRNA


Sequence

uuugacggacacaaaauugaaaguuaaaaaacuauacacgauuguguaaauuugaaacagccacaaauuguguacgauacauaauuuucagcaguuucaaaugcuauagucgugguuuUUUUACUUUCGAUUUUGUAACGGCaaa
.(((.((...((((((((((((((.(((((((....((((((((((...(((((((((.((...((((((((((...))))))))))...)).)))))))))..))))))))))))))))).))))))))))))))..)).))).

Structure
u   a  gac              u       uaua          uaa         a  cac          c 
 uug cg   acaaaauugaaagu aaaaaac    cacgauugug   auuugaaac gc   aaauugugua  
 ||| ||   |||||||||||||| |||||||    ||||||||||   ||||||||| ||   |||||||||| g
 aaC GC   UGUUUUAGCUUUCA UUUuuug    gugcugauau   uaaacuuug cg   uuuaauacau  
a   G  -AA              U       ----          -cg         a  acu          a 


Annotation confidence Not enough data
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Genome context
Chr3: 47718890-47719034 [+]

Database links

Mature lja-miR11180-3p

Accession MIMAT0043995
Description Lotus japonicus lja-miR11180-3p mature miRNA
Sequence 119 - UUUUACUUUCGAUUUUGUAACGGC - 142
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256