miRBase entry: lja-MIR11155c

Stem-loop lja-MIR11155c


Accession
MI0035960
Description
Lotus japonicus lja-MIR11155c precursor miRNA


Sequence

gaguuuguaagcgAGUUUGAUUUGAGUCCCUCUGACGaaaaaugacguuuagugacgguaaaaaaaccgccaacuaacgucauuuuucgUCAGAAGGACUAAAAUCAAACUCGggacaaauuu
((((((((...((((((((((((.(((((.(((((((((((((((((((.((((.((((......)))).).)))))))))))))))))))))).))))).))))))))))))..))))))))

Structure
        aag            G     C                   u   - a    aa 
gaguuugu   cgAGUUUGAUUU AGUCC UCUGACGaaaaaugacguu agu g cggu  a
||||||||   |||||||||||| ||||| ||||||||||||||||||| ||| | ||||   
uuuaaaca   GCUCAAACUAAA UCAGG AGACUgcuuuuuacugcaa uca c gcca  a
        -gg            A     A                   -   a c    aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr1: 58396755-58396877 [+]

Database links

Mature lja-miR11155c-5p

Accession MIMAT0043983
Description Lotus japonicus lja-miR11155c-5p mature miRNA
Sequence 14 - AGUUUGAUUUGAGUCCCUCUGACG - 37
Evidence experimental
Illumina [1]

Mature lja-miR11155c-3p

Accession MIMAT0043984
Description Lotus japonicus lja-miR11155c-3p mature miRNA
Sequence 90 - UCAGAAGGACUAAAAUCAAACUCG - 113
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256