Stem-loop lja-MIR11172

Accession

MI0035959

Description

Lotus japonicus lja-MIR11172 precursor miRNA

Sequence

uugagcgcuaUAGCGGUGAAUAGUGGAGUAGCGGagaacccccagggcgcuacgcuauagcacuauugcgccgcuauggcgcgcaa
.((.(((((((((((((((((((((..((((((.((..(((...)))..)).))))))..))))))).)))))))))))))).)).

Structure

u  a              -       GA      G  aa   c 
 ug gcgcuaUAGCGGUG AAUAGUG  GUAGCG ag  ccc  
 || |||||||||||||| |||||||  |||||| ||  ||| c
 ac cgcgguaucgccgc uuaucac  uaucgc uc  ggg  
a  g              g       ga      a  gc   a 

Annotation confidence Not enough data

Genome context

Chr1: 39777473-39777558 [+]

Mature lja-miR11172-5p

• Accession: MIMAT0043982
• Description: Lotus japonicus lja-miR11172-5p mature miRNA
• Sequence: 11 - UAGCGGUGAAUAGUGGAGUAGCGG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256