miRBase entry: lja-MIR11170

Stem-loop lja-MIR11170


Accession
MI0035953
Description
Lotus japonicus lja-MIR11170 precursor miRNA


Sequence

uuuucgcuccuaauuacuuuaauaccauucacaccuaguuucacuuaucuuacuuaccauacaaauuguauucaaauuugauuuuuaauaaaauuuguauggugaguuggauuagcaaaauuaaauguGAUGAUAUUAGAGUGAUUCGGAGUgagaa
.(((((((((.(((((((((((((.(((.((((..((((((..((.((((.((((((((((((((((.((((.(((......))).)))).)))))))))))))))).)))).))..))))))..))))))).))))))))))))).))))))))).

Structure
u         u             c   u    cc      ca  u    u                g    c   uu 
 uuucgcucc aauuacuuuaaua cau caca  uaguuu  cu aucu acuuaccauacaaauu uauu aaa  u
 ||||||||| ||||||||||||| ||| ||||  ||||||  || |||| |||||||||||||||| |||| |||   
 agagUGAGG UUAGUGAGAUUAU GUA Gugu  auuaaa  ga uagg ugagugguauguuuaa auaa uuu  g
a         C             A   -    aa      ac  u    u                a    u   ua 


Annotation confidence Not enough data
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Genome context
Chr4: 22944142-22944298 [-]

Database links

Mature lja-miR11170-3p

Accession MIMAT0043975
Description Lotus japonicus lja-miR11170-3p mature miRNA
Sequence 129 - GAUGAUAUUAGAGUGAUUCGGAGU - 152
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256