miRBase entry: lja-MIR166

Stem-loop lja-MIR166


Accession
MI0035945
Description
Lotus japonicus lja-MIR166 precursor miRNA

Literature search
1 open access papers mention lja-MIR166
(3 sentences)

Sequence

guugaggggaaugcugucugguucgagaucauucuuaugaagcaaagaaaaccgaggaaaggaaugAUUUCGGACCAGGCUUCAUUCCCCccagc
((((.((((((((..(((((((((((((((((((((.......................)))))))))))))))))))))..)))))))).))))

Structure
    a        cu                     augaagcaaa 
guug ggggaaug  gucugguucgagaucauucuu          g
|||| ||||||||  |||||||||||||||||||||          a
cgac CCCCUUAC  CGGACCAGGCUUUAguaagga          a
    c        UU                     aaggagccaa 


Annotation confidence Not enough data
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Genome context
Chr1: 992525-992619 [-]

Database links

Mature lja-miR166-3p

Accession MIMAT0043967
Description Lotus japonicus lja-miR166-3p mature miRNA
Sequence 67 - AUUUCGGACCAGGCUUCAUUCCCC - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256