miRBase entry: lja-MIR11164

Stem-loop lja-MIR11164


Accession
MI0035943
Description
Lotus japonicus lja-MIR11164 precursor miRNA


Sequence

ggauuuucaaaagugcAUGUUUGGAGACUCAUUUGAAAACaaaagugaagcaaaaaucaugguguacagaagcaacuuucauuagcauuugcuuauguccaucaugauuuugacuucgccguaauuuuucgaaugaguuucuuaacauauaauagcuagggagaucu
((((((((...(((..(((((.(((((((((((((((((.....((((((..((((((((((((.(((.((((((((......))...)))))).))).))))))))))))..))))))......))))))))))))))))).)))))......)))..))))))))

Structure
        aaa   ----gc     U                 -Caaaa      ca            u   g      ---  uu 
ggauuuuc   agu      AUGUU GGAGACUCAUUUGAAAA      gugaag  aaaaucauggug aca aagcaa   cu  c
||||||||   |||      ||||| |||||||||||||||||      ||||||  |||||||||||| ||| ||||||   ||   
ucuagagg   ucg      uacaa ucuuugaguaagcuuuu      cgcuuc  uuuuaguacuac ugu uucguu   ga  a
        -ga   auaaua     u                 uaaugc      ag            c   a      uac  uu 


Annotation confidence Not enough data
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Genome context
Chr1: 16584007-16584173 [-]

Database links

Mature lja-miR11164-5p

Accession MIMAT0043965
Description Lotus japonicus lja-miR11164-5p mature miRNA
Sequence 17 - AUGUUUGGAGACUCAUUUGAAAAC - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256