miRBase entry: lja-MIR11162

Stem-loop lja-MIR11162


Accession
MI0035938
Description
Lotus japonicus lja-MIR11162 precursor miRNA


Sequence

ggauuccuucaugagaagacuugaaaaagugacaaagguaucuagcuaugccggauaaugacaaaaauaagcauugguaucuaacuugcuacuuacacuuuguuuaccaaugcuuauuuucaucaauauuuagcauAGCUAGAUACCUUCGUCACUUUGUcaagucuuccauaaaggaaucc
(((((((((.(((.((((((((((.((((((((.(((((((((((((((((.(((((.(((..((((((((((((((((..(((..((.......))..)))..))))))))))))))))..))).))))).))))))))))))))))).)))))))).))))))))))))).)))))))))

Structure
         c   a          a        a                 c     a   ca                uc   cu  cu 
ggauuccuu aug gaagacuuga aaagugac aagguaucuagcuaugc ggaua uga  aaaauaagcauuggua  uaa  ug  a
||||||||| ||| |||||||||| |||||||| ||||||||||||||||| ||||| |||  ||||||||||||||||  |||  ||  c
ccuaaggaa uac cuucugaacU UUUCACUG UUCCAUAGAUCGAuacg uuuau acu  uuuuauucguaaccau  guu  ac  u
         a   -          G        C                 a     a   ac                uu   uc  au 


Annotation confidence Not enough data
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Genome context
Chr1: 42835069-42835250 [-]

Database links

Mature lja-miR11162-3p

Accession MIMAT0043960
Description Lotus japonicus lja-miR11162-3p mature miRNA
Sequence 137 - AGCUAGAUACCUUCGUCACUUUGU - 160
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256