miRBase entry: lja-MIR11161

Stem-loop lja-MIR11161


Accession
MI0035937
Description
Lotus japonicus lja-MIR11161 precursor miRNA


Sequence

ggaaaaccaaggugaAGCCAAAACCAUCGUGGACAGAGGcaacuucccuuaacuuuugcgacuuccacuaugguuuuggccuuaucgugguuuucc
(((((((((.(((((.(((((((((((.(((((.((..((((.............))))..))))))).))))))))))).))))).)))))))))

Structure
         a     A           C     C  AG    cuucc 
ggaaaacca gguga GCCAAAACCAU GUGGA AG  Gcaa     c
||||||||| ||||| ||||||||||| ||||| ||  ||||     u
ccuuuuggu cuauu cgguuuuggua caccu uc  cguu     u
         g     c           u     -  ag    uucaa 


Annotation confidence Not enough data
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Genome context
Chr4: 38419732-38419827 [+]

Database links

Mature lja-miR11161-5p

Accession MIMAT0043959
Description Lotus japonicus lja-miR11161-5p mature miRNA
Sequence 16 - AGCCAAAACCAUCGUGGACAGAGG - 39
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256