miRBase entry: lja-MIR11157

Stem-loop lja-MIR11157


Accession
MI0035932
Description
Lotus japonicus lja-MIR11157 precursor miRNA


Sequence

gacuacaagcaacuauaguuuuaucuuuuuguuaucuaguauuuuugaauauuaaaaaaacuaggugacgagaagauaauauucaaaaauacuagauaacaACGAGAUAAAAUUAGGGUUGUUUGuaauc
...(((((((((((.((((((((((((.((((((((((((((((((((((((((......((.(....).))....)))))))))))))))))))))))))).)))))))))))).)))))))))))...

Structure
gac           a            u                          aaaaaa  a g 
   uacaagcaacu uaguuuuaucuu uuguuaucuaguauuuuugaauauua      cu g u
   ||||||||||| |||||||||||| ||||||||||||||||||||||||||      || |  
   auGUUUGUUGG AUUAAAAUAGAG Aacaauagaucauaaaaacuuauaau      ga c g
cua           G            C                          --agaa  g a 


Annotation confidence Not enough data
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Genome context
Chr4: 1000546-1000675 [+]

Database links

Mature lja-miR11157-3p

Accession MIMAT0043954
Description Lotus japonicus lja-miR11157-3p mature miRNA
Sequence 102 - ACGAGAUAAAAUUAGGGUUGUUUG - 125
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256