miRBase entry: lja-MIR11156

Stem-loop lja-MIR11156


Accession
MI0035929
Description
Lotus japonicus lja-MIR11156 precursor miRNA


Sequence

aagugagagcaauguuuauugugaAAGAUGGGAUGAUUGAAUUUUGACaauuugaucuaacaugaaugaucaagauuaaaacauaaagucacaugaucauuaauuagcauuuaaucuccaccacucauguuagaucaaauggucaagauuccaucaucucauuucucaccauaaacauuucuuucgcuu
(((((((((.(((((((((.((((.((((((((((((.((((((((((.(((((((((((((((((((((((.((((.........))))...)))))))........................)))))))))))))))).)))))))))).)))))))))))).)))).))))))))).)))))))))

Structure
         c         u    A            U          a                ------------------------       --a    aaa 
aagugagag aauguuuau guga AGAUGGGAUGAU GAAUUUUGAC auuugaucuaacauga                        augauca   gauu   a
||||||||| ||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||                        |||||||   ||||   c
uucgcuuuc uuacaaaua cacu uuuacucuacua cuuagaacug uaaacuagauuguacu                        uacuagu   cuga   a
         u         c    c            c          g                caccaccucuaauuuacgauuaau       aca    aau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr0: 9016074-9016262 [-]

Database links

Mature lja-miR11156-5p

Accession MIMAT0043951
Description Lotus japonicus lja-miR11156-5p mature miRNA
Sequence 25 - AAGAUGGGAUGAUUGAAUUUUGAC - 48
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256