miRBase entry: lja-MIR11151

Stem-loop lja-MIR11151


Accession
MI0035923
Description
Lotus japonicus lja-MIR11151 precursor miRNA


Sequence

uucuccgucaauucaauucugacacucacgaauuacucacguaaacuucucaauuguagaagaaguuuaCGUGAGUAAUUCCUGAGUGUCAGAauugacuaugagaa
.((((.......((((((((((((((((.((((((((((((((((((((((.......).))))))))))))))))))))).))))))))))))))))....)))).

Structure
u    cgucaau                c                     - aa 
 ucuc       ucaauucugacacuca gaauuacucacguaaacuucu c  u
 ||||       |||||||||||||||| ||||||||||||||||||||| |  u
 agag       aguuaAGACUGUGAGU CUUAAUGAGUGCauuugaaga g  g
a    ---uauc                C                     a au 


Annotation confidence Not enough data
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Genome context
Chr2: 20165275-20165381 [-]

Database links

Mature lja-miR11151-3p

Accession MIMAT0043945
Description Lotus japonicus lja-miR11151-3p mature miRNA
Sequence 70 - CGUGAGUAAUUCCUGAGUGUCAGA - 93
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256