miRBase entry: lja-MIR11149a

Stem-loop lja-MIR11149a


Accession
MI0035916
Description
Lotus japonicus lja-MIR11149a precursor miRNA


Sequence

uauacaccgauaauguaaauaagUUUUACACCAUCAUUCAAUCACAUcucuccauuuuguuagcucauaauuaauuuuaaauuuaauaauaucuaaaauagaaaauggaaguuugUGAUUGAAUGAUGGUGUAAAACUuuuuacaccgucggugcaua
....(((((((..((((((.((((((((((((((((((((((((((.((.((((((((.((((......(((((........))))).....)))....).))))))))))..))))))))))))))))))))))))))))))))..)))))))....

Structure
uaua       aa      u                          -U  c        g ----   cucaua     uuu 
    caccgau  uguaaa aagUUUUACACCAUCAUUCAAUCACA  cu uccauuuu u    uag      auuaa   u
    |||||||  |||||| ||||||||||||||||||||||||||  || |||||||| |    |||      |||||    
    guggcug  acauuu uUCAAAAUGUGGUAGUAAGUUAGUgu  ga agguaaaa a    auc      uaauu   a
auac       cc      -                          uu  -        g uaaa   -uauaa     uaa 


Annotation confidence Not enough data
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Genome context
Chr3: 19141989-19142146 [+]

Database links

Mature lja-miR11149a-5p

Accession MIMAT0043936
Description Lotus japonicus lja-miR11149a-5p mature miRNA
Sequence 24 - UUUUACACCAUCAUUCAAUCACAU - 47
Evidence experimental
Illumina [1]

Mature lja-miR11149a-3p

Accession MIMAT0043937
Description Lotus japonicus lja-miR11149a-3p mature miRNA
Sequence 116 - UGAUUGAAUGAUGGUGUAAAACU - 138
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256